Workflow engine for gene expression

GenePattern is a powerful genomic analysis platform that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks. A web-based interface provides easy access to these tools and allows the creation of multi-step analysis pipelines that enable reproducible in silico research.

More information from the Broad Institute available at http://www.broadinstitute.org/cancer/software/genepattern/

QFAB’s GenePattern instance (V3.5) is available at http://guppy.qfab.org:8080/gp

To create an account:

GenePattern is hosted on a VM named Gepetto with 4 cores and 16GB of RAM. The /home is mounted through Lustre and is shared with other software services (Pipeline Pilot, Bora…).

Contact QFAB to discuss your requirements.